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NotesBiology HLTopic 1.8Evidence for evolution from DNA, RNA and protein sequences
Back to Biology HL Topics
1.8.28 min read

Evidence for evolution from DNA, RNA and protein sequences (Biology HL)

IB Biology · Unit 1

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Contents

  1. 1Sequence evidence at Higher Level
  2. 2How do we know evolution happened?
  3. 3DNA and protein sequences — the strongest evidence
  4. 4Reading evolution in sequences
  5. 5Exam-style question (step by step)
Sequence evidence at Higher Level: The same statement as SL, but Higher Level papers bring data: chromosome drawings with telomere and centromere sequences, and sequences to compare. Read the evidence from the figure, one mark per point.

Practise this as you read

  • Explain how base sequences are evidence for evolution.
  • Justify a chromosome fusion from telomere and centromere sequences.

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The big idea: We cannot watch most of evolution happen — it took millions of years.

Building the case

  • Instead, scientists build the case from lines of evidence left behind: shared body plans, fossils, where species live, and — the strongest of all — similarities in DNA.
  • On its own each clue is weak.
  • Together they point the same way: today's species descended, with change, from earlier ones.

The main lines of evidence

  • Homologous structures — the same body plan reused for different jobs
  • Selective breeding — humans changing species fast, showing change is possible
  • Fossils — older rock layers hold simpler, often extinct forms
  • Biogeography — where species live matches how they spread and split
  • DNA / base sequences — the closer the match, the closer the relatives

Homologous structures — the strongest anatomical clue. A human arm, a bat wing and a whale flipper do completely different jobs, yet all share the SAME bones (humerus, radius+ulna, carpals, digits), inherited from a common ancestor.

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Key words first: Evolution = a change in the heritable characteristics of a population over many generations.

Evidence here means an observation that supports the idea of common ancestry — not proof of a single event.

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DNA is the strongest evidence: The most powerful clue is molecular: comparing DNA base sequences (or the protein sequences they code for).

What the comparison shows

  • Species that share more of their sequence are more closely related and split from a common ancestor more recently.
  • This is why a cladogram built from DNA usually agrees with the one built from body plans — two independent clues telling the same story.
Reading an evolutionary tree (cladogram): Evidence is often drawn as a cladogram — a branching tree where each branch tip is a species and each branch point (node) is a shared common ancestor the species above it are descended from.

Finding the closest relative

1

Trace back

To find a species' closest relative, trace back down both branches until they meet.

2

Find the lowest node

The pair that meets at the most recent (lowest) node are the most closely related, because they shared a common ancestor most recently.

The trick: The closest relative is NOT the one drawn nearest on the page — it is the one you reach by going back the fewest branch points.
Cladogram (evolutionary tree)
A branching diagram showing how species are related by descent from common ancestors.
Node (branch point)
A point where the tree splits — it represents the most recent common ancestor of every species above that point.
Most recent common ancestor
The latest shared ancestor of two species — found at the node where their two branches join; the two species joined at the most recent node are the most closely related.

Exam-style question — reading a cladogram

A cladogram of four cat species shows: a leopard and a jaguar join at one node; that branch then joins a lion at a deeper (older) node; and a domestic cat branches off at the deepest node of all. Which species is the leopard's closest relative, and how can you tell? [2]

How to read it

  1. Find the leopard's branch and trace back to its first node. Going back from the leopard, the very first branch point you reach is the one it shares with the jaguar — this is their most recent common ancestor.
  2. Compare nodes. The lion and the domestic cat only join the leopard's line at deeper (older) nodes, so their shared ancestors with the leopard are further back in time.
  3. Answer the command term. The leopard's closest relative is the jaguar, because the two share the most recent common ancestor (they meet at the lowest / most recent node).

Final answer

The jaguar — the leopard and jaguar branches join at the most recent (lowest) node, so they share a common ancestor more recently than the leopard does with the lion or the domestic cat.

The leopard and jaguar meet at the most recent node (highlighted), so the jaguar is the leopard's closest relative; the domestic cat branches off earliest.

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Watch out — not all 'evidence' counts: Inheriting a trait an organism gained during its life (e.g. a giraffe stretching its neck, then passing on a longer neck) is Lamarckism — it is wrong and is not evidence for evolution.

Valid evidence relies on heritable features only: shared body plans, fossils, biogeography, selective breeding and DNA.
The big idea: Base sequences of DNA or RNA, and amino acid sequences of proteins, can be compared between species. The more similar the sequences, the more recent the common ancestor.

The points to remember

  • Compare the same gene (or the same protein) in different living species.
  • Shared sequences are evidence of common ancestry: they were inherited from one ancestor.
  • Mutations build up gradually after two species split, so differences grow with time.
  • More similar sequences mean closer relatives with a more recent common ancestor.
  • Base sequences of DNA or RNA, or amino acid sequences of a protein, can all be used.
Remember it as: Fewer differences, closer cousins.
Four rows of letters, the same 15-base stretch of a gene in a human, a chimpanzee, a gorilla and a mouse; bases that differ from the human one are boxed; the counts 1, 2 and 5; a cladogram with human and chimpanzee joined most recently and the mouse branching first
Fewer differences, more recent common ancestor.
Real example: cytochrome c: Cytochrome c is a protein of respiration found in almost every organism. Its amino acid sequence is identical in humans and chimpanzees and differs in only one amino acid in the rhesus monkey.

Watch the wording in an answer:

Say 'base sequences', not just 'the code': The genetic code is the same in almost all life. The evidence is that the base sequences of genes are shared, and how similar they are.

Sequences inside chromosomes are evidence too. Humans have 46 chromosomes; chimpanzees, gorillas and orangutans have 48. The DNA sequences of human chromosome 2 show it formed when two ancestral chromosomes fused.

Human chromosome 2 beside chimpanzee chromosomes 12 and 13 laid end to end; dashed lines join matching bands; a telomere sequence marked in the middle of human 2; a second, inactive centromere marked lower down
Sequences that belong at chromosome ends, found in the middle.

The evidence for fusion

  • The bands and base sequences of human 2 match chimpanzee 12 and 13 end to end.
  • Human 2 is about as long as the two chimpanzee chromosomes together.
  • Telomere sequences, normally at the ends, sit in the middle of human 2: the fusion point.
  • Human 2 has a second centromere sequence, no longer active.

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How it is tested: Paper 1A: which evidence shows common ancestry. Paper 1B: justify a fusion from a drawing of chromosomes, one mark per piece of evidence.
Domestic horse chromosome 5 beside Przewalski's horse chromosomes 23 and 24 end to end, with telomere sequences at the ends and in the middle of chromosome 5, and two centromere sequences on itDomestic horse chromosome 5 beside Przewalski's horse chromosomes 23 and 24 end to end, with telomere sequences at the ends and in the middle of chromosome 5, and two centromere sequences on it
Two horses: one chromosome or two?
IB-style questionJustify[4 marks]

Domestic horses have 64 chromosomes and Przewalski's horses have 66. Using the diagram, justify the hypothesis that domestic horse chromosome 5 arose from the fusion of two chromosomes like Przewalski's horse 23 and 24.

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Cytochrome c is a protein used in respiration by almost all organisms.

how the amino acid sequence of cytochrome c can be used as evidence for evolution.
[2 marks]

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Previous1.8.1Evolution as change in the heritable characteristics of a populationNextEvidence for evolution from selective breeding1.8.3

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