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NotesBiology HLTopic 1.1Hydrogen bonds from the polar covalent bonds in water
Back to Biology HL Topics
1.1.212 min read

Hydrogen bonds from the polar covalent bonds in water (Biology HL)

IB Biology · Unit 1

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Contents

  1. 1Hydrogen bonds in water at Higher Level
  2. 2Sharing electrons unequally
  3. 3Slight charges: δ+ and δ−
  4. 4Water molecules attract each other: the hydrogen bond
  5. 5Weak alone, strong together
  6. 6Drawing two or more water molecules
  7. 7Exam-style question (step by step)
Hydrogen bonds in water at Higher Level: The same statement as SL, and the same drawing skill. At HL the multiple-choice questions hand you four drawings and ask which has the partial charges in the right places, so practise placing δ− and δ+ until it is automatic, and draw three molecules rather than two so the bonds to several neighbours are clear.

Practise this as you read

  • Draw every molecule bent, with δ− on the O and δ+ on each H.
  • Join molecules with a dashed line from a δ+ H to a δ− O, and label it.
  • Explain water's behaviour with two words: polar, then many hydrogen bonds.

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The big idea: A water molecule is one oxygen atom and two hydrogen atoms, held together by sharing electrons. Oxygen does not share fairly: it pulls the electrons closer to itself.

Picture a tug of war between an adult and a small child, both holding one rope. The rope ends up closer to the adult.

In water, oxygen is the adult and hydrogen is the child. The rope is the pair of shared electrons.

Two pictures. Fair sharing: two hydrogen atoms with the pair of shared electrons exactly in the middle of the bond. Unfair sharing in water: a big oxygen atom and a small hydrogen atom, with the shared electrons pulled close to the oxygenTwo pictures. Fair sharing: two hydrogen atoms with the pair of shared electrons exactly in the middle of the bond. Unfair sharing in water: a big oxygen atom and a small hydrogen atom, with the shared electrons pulled close to the oxygen
Two atoms pulling equally keep the electrons in the middle. In water, oxygen pulls them towards itself.
Remember it as: Oxygen wins the tug of war, so the shared electrons sit closer to it.

The points to remember

  • The atoms in water are held together by sharing electrons. A shared pair is a covalent bond.
  • Oxygen pulls on the shared electrons harder than hydrogen does: it is more electronegative.
  • So the electrons sit closer to the oxygen. Sharing that is not equal makes a polar covalent bond.
Real example: hydrogen sulfide: Hydrogen sulfide (H₂S), the rotten-egg gas from volcanoes, has water's shape, but sulfur pulls the shared electrons only a little harder than hydrogen. Its bonds are barely polar; water's are strongly polar.

One mix-up to avoid:

The electrons are still shared: Oxygen does not take an electron away from hydrogen. The pair is still shared, just unequally.

(Taking an electron away would make an ionic bond, and water has none.)

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The big idea: Because the shared electrons sit closer to the oxygen, the oxygen end is slightly negative and each hydrogen is slightly positive. These small charges are written with the Greek letter delta: a partial charge.

The points to remember

  • The oxygen end is slightly negative (δ−); each hydrogen is slightly positive (δ+).
  • δ means partial: a small charge, not the full charge of an ion. Water is neutral overall.
  • The molecule is bent (about 104.5°), so both δ+ hydrogens sit on one side and the δ− oxygen on the other.
  • A molecule with a δ− end and a δ+ end is a polar molecule.
Remember it as: δ means 'a bit': a bit negative on the O, a bit positive on each H.
One water molecule: an oxygen atom joined to two hydrogen atoms by single lines at an angle of 104.5 degrees, with δ− beside the oxygen and δ+ beside each hydrogenOne water molecule: an oxygen atom joined to two hydrogen atoms by single lines at an angle of 104.5 degrees, with δ− beside the oxygen and δ+ beside each hydrogen
The drawing to aim for: one O, two H, single bonds at an angle, δ− on the O, δ+ on each H.

Real example: rub a balloon on a jumper and hold it beside a thin stream of tap water. The stream bends towards the balloon, because the charged balloon pulls on the δ+ and δ− ends of the polar molecules. A stream of a non-polar liquid such as hexane does not bend.

The trap: full charges: Never write a bare + or − on water. A full charge means an ion, and no electron has moved from one atom to another.

Always write δ+ and δ−.
The big idea: Because each water molecule is polar, its molecules attract one another. The δ+ hydrogen of one molecule is pulled towards the δ− oxygen of a neighbour. This weak attraction is a hydrogen bond.

The points to remember

  • The δ+ hydrogen of one water molecule is attracted to the δ− oxygen of a neighbour: a hydrogen bond.
  • Hydrogen bonds act between molecules; covalent bonds act within one molecule.
  • A hydrogen bond is weak compared with a covalent bond, and it is drawn as a dashed line.
  • Each water molecule can hydrogen-bond to several neighbours at once.
Remember it as: Covalent WITHIN a molecule, hydrogen bond BETWEEN molecules.
Rain drops strung as beads along a spider web, one drop magnified to show water molecules held together by dashed hydrogen bondsRain drops strung as beads along a spider web, one drop magnified to show water molecules held together by dashed hydrogen bonds
Rain on a spider web hangs as beads: inside each one, hydrogen bonds hold the molecules together.

Real example: after rain, drops hang as separate beads along a spider's web instead of running off as a sheet. Hydrogen bonds hold the molecules of each drop to one another.

Two bent water molecules with δ− on each oxygen and δ+ on each hydrogen; a dashed line labelled hydrogen bond runs from a δ+ hydrogen of the left molecule to the δ− oxygen of the right oneTwo bent water molecules with δ− on each oxygen and δ+ on each hydrogen; a dashed line labelled hydrogen bond runs from a δ+ hydrogen of the left molecule to the δ− oxygen of the right one
A hydrogen bond (dashed) runs from a δ+ H of one molecule to the δ− O of the other. The solid O–H lines stay inside each molecule.
Covalent bondHydrogen bond
Where it actswithin one molecule (O–H)between separate molecules
What causes itsharing a pair of electronsδ+ H attracted to δ− O
Strengthstrongweak, but there are very many
How it is drawna solid linea dashed line

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Hydrogen sulfide (H₂S) is water's look-alike: the same bent shape, sulfur in place of oxygen. At 20 °C it is a gas and water is a liquid. The difference is what holds the molecules together.

The points to remember

  • One hydrogen bond is easy to break; a drop of water holds a huge number of them.
  • So a lot of energy is needed to pull water molecules apart.
  • That is why water is a liquid at room temperature while a similar-sized non-polar molecule is a gas.
  • The same bonds give water the properties the next pages use: it sticks to itself and it warms up slowly.
Remember it as: One thread snaps easily; a rope of threads holds.
Table comparing water, ammonia and hydrogen sulfide: molecular mass 18, 17 and 34; boiling point 100, −33 and −60 °C; water liquid at 20 °C, the other two gasesTable comparing water, ammonia and hydrogen sulfide: molecular mass 18, 17 and 34; boiling point 100, −33 and −60 °C; water liquid at 20 °C, the other two gases
Hydrogen sulfide has water's shape and twice its mass, yet boils at −60 °C: it forms almost no hydrogen bonds.
Real example: hydrogen sulfide: Sulfur pulls shared electrons only a little harder than hydrogen, so H₂S is hardly polar and forms almost no hydrogen bonds: it boils at −60 °C. Ammonia (NH₃) is polar and forms some hydrogen bonds, so it boils at −33 °C. Water forms the most, and boils at 100 °C.

Why so many bonds matter. Any one hydrogen bond is easy to break. But there are so many of them that separating water molecules takes a lot of energy, and that is the reason behind nearly all of water's special properties.

The big idea: The exam asks you to draw two or more water molecules and the hydrogen bonds between them, with δ+ and δ− to show the polarity. Here is the drawing, one step at a time.

The points to remember

  • Draw each molecule bent: one O, two H, single lines for the covalent bonds.
  • Write δ− on every O and δ+ on every H.
  • Draw a dashed line from a δ+ H of one molecule to the δ− O of another, and label it hydrogen bond.
  • Never join O to O or H to H, and never draw the hydrogen bond as a solid line.
Remember it as: Bent molecule, δ on every atom, dashed line H to O, label it.
Three water molecules drawn step by step with their partial charges, then two dashed hydrogen bonds from the central molecule's δ+ hydrogens to the δ− oxygens of its neighbours, labelled
Three molecules, charges on every atom, then a dashed hydrogen bond to each neighbour: the full-mark drawing one step at a time.
The trap: the wrong ends: A hydrogen bond joins a hydrogen of one molecule to the oxygen of another. A dashed line from O to O, or a solid line between the molecules, does not count.

Real example: in ice, every water molecule is held by hydrogen bonds to exactly four neighbours in an open framework. Your drawing of one molecule with its neighbours shows the start of that pattern.

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How this is tested: A multiple-choice question shows four drawings of a water molecule and asks which one has the partial charges in the right places.

A written part asks you to draw one water molecule for two marks, or two or more molecules interacting for four.
IB-style questionDraw[4 marks]

Sweat is about 99 % water. Draw a labelled diagram to show how water molecules interact with each other, showing at least two molecules.

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Three water molecules drawn step by step with their partial charges, then two dashed hydrogen bonds from the central molecule's δ+ hydrogens to the δ− oxygens of its neighbours, labelled
Three molecules, charges on every atom, then a dashed hydrogen bond to each neighbour: the full-mark drawing one step at a time.
IB-style questionDraw[2 marks]

Blood plasma is about 92 % water. Draw a diagram to show the structure of one water molecule.

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A water molecule drawn step by step: the oxygen, each hydrogen with its bond at an angle, then δ− and δ+
Draw one water molecule, one atom or label at a time.
The trap: a straight line: H–O–H drawn in a straight line loses the shape mark: the bonds must sit at an angle.

A circle labelled H₂O is not a structure either. Show each atom and each bond.

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the type of bond that joins the oxygen atom to each hydrogen atom within a water molecule. [1 mark]

Related Biology HL Topics

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1.1.1Water as the medium for life1.1.3Cohesion of water and its consequences for organisms1.1.4Adhesion of water to polar or charged materials1.1.5Solvent properties of water: metabolism and transport
View all Biology HL topics
Improve your exam techniqueCommand terms, paper structure, and mark-scheme tips for Biology HL
Previous1.1.1Water as the medium for lifeNextCohesion of water and its consequences for organisms1.1.3

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