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NotesBiology HLTopic 1.2Components of a nucleotide
Back to Biology HL Topics
1.2.25 min read

Components of a nucleotide (Biology HL)

IB Biology · Unit 1

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Contents

  1. 1Components of a nucleotide at Higher Level
  2. 2The building block of nucleic acids
  3. 3Drawing a nucleotide, step by step
  4. 4Exam-style question
Components of a nucleotide at Higher Level: The same statement as SL. At HL you also need the direction of a strand (its 5′ and 3′ ends), and that is read from the same carbon numbers you learn here, so learn the drawing with its 1′ and 5′ joins.

Practise this as you read

  • Draw an RNA nucleotide and a DNA nucleotide from memory, each labelled.
  • Name the sugar every time: deoxyribose or ribose.

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The big idea: DNA and RNA are long chains called nucleic acids.

Picture a string of beads: each bead is one nucleotide — the monomer (single building block) they are built from.

Each nucleotide is a bit of backbone (phosphate + sugar) plus one coloured base. Join many together: the backbones make one long 'string' and the bases stick out along it — that whole chain is a nucleic acid (DNA or RNA).

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Part of a nucleotideWhat it isJob
Phosphate groupA small group containing phosphorusLinks nucleotides together into a strand
Pentose sugarA 5-carbon sugar (deoxyribose or ribose)Forms the backbone with the phosphate
Nitrogenous baseOne of A, T/U, C or GCarries the genetic information

A single DNA nucleotide: a phosphate joined to a pentose sugar (deoxyribose), which is joined to a nitrogenous base. The sugar sits in the middle.

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Picture one nucleotide: Think of three pieces joined in a row:

phosphate — sugar — base

The phosphate and sugar make the backbone; the base sticks out to the side and is the part that codes information.

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The big idea: In the exam a nucleotide is drawn with three shapes: a circle, a pentagon and a rectangle. Where they join, and what you call them, earns the marks.

The points to remember

  • Three shapes: a circle for the phosphate, a pentagon for the pentose sugar, a rectangle for the base.
  • The base joins the sugar at carbon 1′, the corner on the right of the ring.
  • The phosphate joins the sugar at carbon 5′, the carbon just outside the ring on the left.
  • Name the sugar: deoxyribose in DNA, ribose in RNA.
  • Any base fits, except thymine in RNA and uracil in DNA.
Remember it as: Phosphate on 5′, base on 1′: the sugar sits in the middle.
A nucleotide drawn in four steps: a pentagon labelled ribose, carbons 1′ and 5′ marked, a base rectangle joined at carbon 1′, a phosphate circle joined at carbon 5′
How to draw an RNA nucleotide for full marks, one shape at a time.
Two labels that lose the mark: 'Pentose' on its own is not enough: write deoxyribose or ribose.

A base of thymine in an RNA nucleotide, or uracil in a DNA nucleotide, is wrong.

To tell the two sugars apart, look at carbon 2′, the lower right corner of the ring:

Two ring structures side by side: ribose with OH on carbon 2′, deoxyribose with only H on carbon 2′, both circledTwo ring structures side by side: ribose with OH on carbon 2′, deoxyribose with only H on carbon 2′, both circled
The one difference between the two sugars is at carbon 2′.
Real example: a crop short of phosphorus: Maize grown in soil short of phosphorus stays small and its leaves turn purple. Without phosphorus, its cells cannot make enough phosphate groups for DNA, RNA, ATP and phospholipids, the molecules of cell membranes.
How this is tested: This topic is tested on Paper 2 and on Paper 1A, in three kinds of question.

Three question types

  • On Paper 2 a 3-mark Draw question can ask you to draw and label a single DNA or RNA nucleotide — show the phosphate, sugar and base joined together.
  • Distinguish / contrast questions ask for the structural differences between DNA and RNA (sugar, one base, strands).
  • On Paper 1A you may have to identify which sugars and bases belong to DNA, RNA or both.

IB-style question — draw and label a DNA nucleotide

Draw and label a diagram of a single DNA nucleotide. [3]

How to score all three marks

  1. Draw the three parts joined in a row. Show a phosphate group, joined to a pentose sugar (deoxyribose), joined to a nitrogenous base. A simple labelled chain of three shapes is enough — circle = phosphate, pentagon = sugar, rectangle = base.
  2. Label each part clearly. Write phosphate, (deoxyribose) sugar, and base next to the correct shape.
  3. Show how they join. The phosphate attaches to the sugar, and the base attaches to the sugar — so the sugar sits in the middle, linked to both. (Mark 1: three parts present. Mark 2: parts correctly labelled. Mark 3: phosphate–sugar–base joined the correct way, with the sugar central.)

Final answer

A labelled chain showing phosphate — deoxyribose sugar — nitrogenous base, with the sugar in the centre joined to both the phosphate and the base.

The DNA nucleotide your diagram should match: phosphate — sugar (deoxyribose) — base, all labelled, with the sugar central.

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The diagram you should draw: Three labelled shapes joined like this:

phosphate — sugar (deoxyribose) — base

Check yours shows the sugar in the middle, joined on one side to the phosphate and on the other side to the base, with all three labelled. For an RNA nucleotide the only changes are: sugar = ribose, and the base can be uracil.
Part of a nucleotideWhat it isJob
Phosphate groupA small group containing phosphorusLinks nucleotides together into a strand
Pentose sugarA 5-carbon sugar (deoxyribose or ribose)Forms the backbone with the phosphate
Nitrogenous baseOne of A, T/U, C or GCarries the genetic information

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Phosphorus is an element that all living organisms must obtain. Maize grown in soil short of phosphorus stays small and grows slowly.

two biochemicals important to life that have phosphorus as a raw material.
[1 mark]

Related Biology HL Topics

Continue learning with these related topics from the same unit:

1.1.1Water as the medium for life1.1.2Hydrogen bonds from the polar covalent bonds in water1.1.3Cohesion of water and its consequences for organisms1.1.4Adhesion of water to polar or charged materials
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Improve your exam techniqueCommand terms, paper structure, and mark-scheme tips for Biology HL
Previous1.2.1DNA as the genetic material of all living organismsNextSugar–phosphate bonding and the sugar–phosphate backbone1.2.3

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