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NotesBiologyTopic 3.1Relationships between the structure of the active site, enzyme-substrate specificity and denaturation
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3.1.73 min read

Relationships between the structure of the active site, enzyme-substrate specificity and denaturation

IB Biology · Unit 3

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Contents

  1. 1Shape, specificity and denaturation
  2. 2Exam-style question (step by step)
The big idea: The shape and chemical properties of the active site make an enzyme specific. Anything that permanently changes that shape denatures the enzyme, and it stops working.
Four panels drawn step by step: an enzyme whose active site fits a round substrate but not a square one; the round substrate bound; heat or extreme pH breaking bonds in the enzyme; the enzyme with a misshapen active site that the substrate no longer fits
Specificity and denaturation, one step at a time.

The points to remember

  • Specificity: only a substrate whose shape and chemistry match the active site can bind.
  • The active site's shape is held by bonds between amino acids across the whole protein.
  • High temperature or extreme pH breaks these bonds, so the protein's shape changes.
  • Denaturation is a permanent change: the active site no longer fits the substrate, so activity is lost.
Remember it as: Shape gives specificity; lose the shape and the enzyme is denatured.

Real example: pepsin. Pepsin digests proteins in the stomach, where the pH is about 2. In the less acidic small intestine it stops working: the change in pH alters the bonds that hold its active site in shape.

Trap: Never say enzymes are killed. Enzymes are molecules, not living things: they are denatured.

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How it is asked: Expect an explanation of why enzymes are specific, why they denature, or, at HL, a long answer on what changes active sites.
IB-style questionExplain[3 marks]

Explain how denaturation affects the activity of an enzyme.

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IB Exam Questions on Relationships between the structure of the active site, enzyme-substrate specificity and denaturation

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How Relationships between the structure of the active site, enzyme-substrate specificity and denaturation Appears in IB Exams

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  • Define

    Give the precise meaning of key terms related to Relationships between the structure of the active site, enzyme-substrate specificity and denaturation.

    AO1
  • Describe

    Give a detailed account of processes or features in Relationships between the structure of the active site, enzyme-substrate specificity and denaturation.

    AO2
  • Explain

    Give reasons WHY — cause and effect within Relationships between the structure of the active site, enzyme-substrate specificity and denaturation.

    AO3
  • Evaluate

    Weigh strengths AND limitations of approaches in Relationships between the structure of the active site, enzyme-substrate specificity and denaturation.

    AO3
  • Discuss

    Present arguments FOR and AGAINST with a balanced conclusion.

    AO3

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Related Biology Topics

Continue learning with these related topics from the same unit:

3.1.1Enzymes as catalysts3.1.2Role of enzymes in metabolism3.1.3Anabolic and catabolic reactions3.1.4Enzymes as globular proteins with an active site for catalysis
View all Biology topics
Improve your exam techniqueCommand terms, paper structure, and mark-scheme tips for Biology
Previous3.1.6Role of molecular motion and substrate-active site collisions in enzyme catalysisNextEffects of temperature, pH and substrate concentration on the rate of enzyme activity3.1.8

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