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v0.1.1429
NotesBiology HLTopic 4.3What mutations are & their types
Back to Biology HL Topics
4.3.13 min read

What mutations are & their types

IB Biology • Unit 4

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Contents

  • What a mutation is
  • The three types of gene mutation
  • Exam-style question
The big idea: A mutation is a random change to the base sequence of DNA.

DNA is a code spelled out in four bases (A, T, C and G). If that spelling is changed — even by a single base — the gene now carries different information.

Mutations are random: they are not made on purpose and cannot be aimed at a useful result. They are also the original source of all new alleles (new versions of a gene), which is why they matter so much for variation and evolution.
Mutation
A random change in the base sequence of DNA (the genetic material).
Gene
A length of DNA that carries the code for a particular characteristic.
Allele
A particular version of a gene. A new allele is produced when a mutation changes the base sequence of an existing gene.
Base sequence
The order of the four bases (A, T, C, G) along a strand of DNA — this order is the genetic code.
Mutagen
Anything that increases the rate of mutation, such as ultraviolet (UV) light, X-rays or certain chemicals.
Mutations make new alleles: Where do the different versions of a gene come from in the first place?

They come from mutation. A change to the base sequence of an existing gene creates a new allele — a slightly different version of that gene.

So mutation is the ultimate source of all the genetic variation in living things.

Most gene mutations you need at SL involve a change to a single base. There are three kinds, and they differ in what happens to the bases.

The key word for telling them apart is whether a base is swapped, added or removed.

Substitution
One base is swapped for a different base. The total number of bases stays the same.
Insertion
One (or more) extra base is added into the sequence, increasing the total number of bases.
Deletion
One (or more) base is removed from the sequence, decreasing the total number of bases.
Frameshift
The shift in the reading frame caused by an insertion or a deletion, so that every codon after the change is read differently.
Why insertion and deletion hit harder: DNA is read in triplets (groups of three bases called codons).

A substitution changes only the one base it touches, so usually just one codon is affected.

An insertion or a deletion changes the total number of bases, so the cell reads every triplet after the change out of step. This is a frameshift, and it usually changes all of the codons downstream — a much bigger effect from a single base change.
Mutation typeWhat changes in the DNAEffect on the reading frame
SubstitutionOne base is swapped for a different base (e.g. A becomes G)No shift — only the one codon containing that base can change
InsertionOne (or more) extra base is added into the sequenceShifts the reading frame from that point on (a frameshift)
DeletionOne (or more) base is removed from the sequenceShifts the reading frame from that point on (a frameshift)

Substitution

  • One base is swapped for another
  • Total number of bases stays the same
  • Reading frame is not shifted
  • Usually affects one codon only

Insertion / Deletion

  • A base is added (insertion) or removed (deletion)
  • Total number of bases changes
  • Reading frame is shifted (a frameshift)
  • Usually affects every codon downstream
Mutagens can cause these changes: Mutations happen by chance, but their rate goes up when DNA is exposed to a mutagen.

Ultraviolet (UV) light, X-rays and some chemicals can damage DNA and cause mutations such as a substitution (or an insertion/deletion).

If asked to name a mutation type a mutagen could cause, any of substitution, insertion or deletion is a valid answer.
A memory hook: Sub = substitute (swap one for another). Insertion = put one in. Deletion = take one out.

Only insertion and deletion change the number of bases — and changing the number is what causes a frameshift.

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How this is tested: A favourite Paper 1B task gives you a DNA base sequence before and after a change and asks you to classify the mutation — read the two sequences, then decide whether a base was swapped (substitution), added (insertion) or removed (deletion).

Paper 1A multiple-choice items often ask you to identify a true general feature of mutations (random; a change to the base sequence; the source of new alleles), or to name a mutation type a mutagen such as UV light can cause.

On Paper 1B a 2-mark Compare and contrast can ask for a similarity and a difference between two named types — give one of each, clearly labelled.

IB-style question — classify the mutation from two base sequences

A short length of DNA normally reads T A C G G A C T T (shown in triplets). After a mutation it reads T A C G T A C T T. Classify the type of mutation that has occurred, and justify your answer. [2]

How to score both marks

  1. Compare the two sequences base by base. The first triplet (T A C) and the last (C T T) are unchanged. In the middle triplet, the original G G A has become G T A — the second base G has become T.
  2. Decide what happened to the bases. One base has been swapped for a different base, and the total number of bases is unchanged (still 9). No base was added or removed.
  3. Classify and justify. This is a substitution mutation, because one base (G) has been replaced by another base (T) while the number of bases stays the same. (Mark 1: identifies substitution. Mark 2: justifies — one base replaced by another / number of bases unchanged.)

Final answer

Substitution — one base (G) has been replaced by another base (T); the total number of bases is unchanged, so the reading frame is not shifted.

✓ How to tell the types apart in data: Count the bases before and after.

Same number of bases, one letter different → substitution.

One more base → insertion. One fewer base → deletion — and in both of these, every triplet after the change is read differently (a frameshift).
DNA base sequenceWhat happenedMutation type
Original: T A C G G A C T Tthe reference sequence (read in triplets)(none)
T A C G T A C T Tthe middle G was swapped for a TSubstitution
T A C G A G A C T Tan extra A was added — every triplet after it changesInsertion (frameshift)
T A C G A C T Ta base (G) was removed — every triplet after it changesDeletion (frameshift)

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what is meant by the term mutation. [1 mark]

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