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NotesBiology HLTopic 4.1Enzymes of replication: helicase & DNA polymerase
Back to Biology HL Topics
4.1.22 min read

Enzymes of replication: helicase & DNA polymerase

IB Biology • Unit 4

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Contents

  • The two enzymes of replication
  • Which bonds each enzyme acts on
  • Exam-style question
The big idea: Before a cell divides it must copy all of its DNA — this is DNA replication.

Two enzymes do the key work. Helicase unzips the double helix, and DNA polymerase builds a new strand against each separated half.

The result is two identical DNA molecules, each keeping one old (template) strand and one new strand — this is what 'semi-conservative' means.

At the replication fork, helicase unzips the double helix by breaking the hydrogen bonds between the bases; DNA polymerase then builds a new complementary strand against each exposed template (A–T, G–C).

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DNA replication
The process of copying a DNA molecule to make two identical molecules, each with one original strand and one new strand.
Helicase
The enzyme that unwinds and unzips the double helix by breaking the hydrogen bonds between the paired bases.
DNA polymerase
The enzyme that builds each new strand by adding complementary nucleotides to a template strand and joining them with covalent bonds.
Template strand
One of the two original (parental) strands; its base sequence is read to decide which nucleotides are added to the new strand.
Complementary base pairing
The rule that A pairs with T and G pairs with C, so each template strand specifies exactly one new strand.
Two enzymes, two jobs: Keep the division of labour clear:

Helicase = unzips (separates the strands). DNA polymerase = builds (adds the new nucleotides).

Helicase goes first to open the helix; DNA polymerase follows to fill in the new strands.

The two strands of DNA are held together by hydrogen bonds between the paired bases (A–T, G–C). Along each strand, the nucleotides are joined into a backbone by much stronger covalent bonds.

The exam expects you to know which bond each enzyme acts on — and they act on different ones.

Helicase BREAKS hydrogen bonds: Helicase moves along the double helix and breaks the hydrogen bonds between the paired bases.

This unzips the two strands apart, separating the parental helix into two single template strands and creating the replication fork where copying happens.

Helicase works at the fork: it breaks the hydrogen bonds holding the two strands together, separating the parental double helix into two single template strands.

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DNA polymerase FORMS covalent bonds: DNA polymerase then reads each template strand and adds the complementary nucleotides (A opposite T, G opposite C).

As it joins each new nucleotide to the growing strand, it forms covalent bonds along the sugar–phosphate backbone.

It can only add nucleotides in one direction — the 5'->3' direction — building the new strand one nucleotide at a time.

DNA polymerase moves along each template strand adding complementary nucleotides and joining them with covalent bonds, building each new strand in the 5'->3' direction.

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Helicase

  • Unzips the double helix
  • Breaks the hydrogen bonds between the bases
  • Acts on the double-stranded parental DNA
  • Works first, opening the replication fork

DNA polymerase

  • Builds the new complementary strand
  • Forms the covalent bonds in the backbone
  • Acts on each single template strand
  • Adds nucleotides in the 5'->3' direction
A memory hook for the bonds: Helicase handles the Hydrogen bonds — and it breaks them.

Polymerase Puts nucleotides together — forming the covalent bonds of the new backbone.

Different enzyme, different bond, opposite action: one breaks, one forms.
BondWhere it isWhich enzyme acts on it during replication
Hydrogen bondHolds the two strands together (between paired bases A–T, G–C)Helicase BREAKS it to separate the strands
Covalent bondJoins nucleotides along the sugar-phosphate backbone of a strandDNA polymerase FORMS it to build the new strand

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How this is tested: On Paper 1 a 1-mark question often asks you to state the role of DNA polymerase — the answer is that it adds complementary nucleotides to the template strand to build the new strand.

A favourite Paper 1A matching item asks which bonds helicase and DNA polymerase respectively break or form: helicase breaks hydrogen bonds, DNA polymerase forms covalent bonds.

On Paper 2 the same idea appears inside a longer 'describe replication' answer — name the enzyme, then say exactly what it does.

IB-style question — state the role of DNA polymerase

State the role of DNA polymerase in DNA replication. [1]

How to score the mark

  1. Name what it builds. DNA polymerase builds a new strand against each template strand.
  2. Say exactly how. It does this by adding complementary nucleotides (A opposite T, G opposite C) and joining them with covalent bonds. (Award 1 mark for 'adds nucleotides / builds the new complementary strand on the template'.)

Final answer

DNA polymerase adds complementary nucleotides to a template strand, building the new (daughter) strand and joining the nucleotides with covalent bonds.

✓ Why this scores the mark: The mark is for the action — adding nucleotides / building the new strand.

Just naming the enzyme is not enough; 'state the role' wants what it actually does.

Now contrast the two enzymes side by side:

IB-style question — which bonds does each enzyme act on?

During DNA replication, state which type of bond helicase breaks and which type of bond DNA polymerase forms. [2]

How to score both marks

  1. Helicase. Helicase breaks the hydrogen bonds between the paired bases, separating the two strands.
  2. DNA polymerase. DNA polymerase forms covalent bonds between the nucleotides of the new strand (the sugar–phosphate backbone). (Mark 1: helicase breaks hydrogen bonds. Mark 2: DNA polymerase forms covalent bonds.)

Final answer

Helicase breaks the hydrogen bonds between the bases; DNA polymerase forms covalent bonds between the nucleotides of the new strand.

FeatureHelicaseDNA polymerase
What it doesUnwinds and unzips the double helixBuilds the new complementary strand
Bonds it acts onBREAKS the hydrogen bonds between the basesFORMS the covalent bonds joining nucleotides in the new strand
Acts on which strand?The double-stranded parental helix (separates it into two)Each single template strand exposed by helicase
Direction / orderWorks first, at the replication forkWorks after, adding nucleotides in the 5'->3' direction
ResultTwo separated template strandsA new complementary strand against each template

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the role of DNA polymerase in DNA replication. [1 mark]

Related Biology HL Topics

Continue learning with these related topics from the same unit:

4.1.1Semi-conservative replication & the Meselson-Stahl experiment
4.1.3PCR, Taq polymerase & gel electrophoresis
4.1.4The genome & DNA profiling
4.10.1Variation: the raw material
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