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NotesChemistryTopic 3.2Representing organic molecules
Back to Chemistry Topics
3.2.23 min read

Representing organic molecules

IB Chemistry • Unit 3

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Contents

  • Five ways to draw the same molecule
  • From molecular to skeletal — and back
  • Structural isomers
  • Exam-style question
The big idea: Organic chemists draw the same molecule in several ways, each showing a different amount of detail. The five you must know are:

- Empirical formula — the simplest whole-number ratio of atoms. - Molecular formula — the actual number of each atom in one molecule. - Structural (full) formula — every atom and every bond drawn out. - Condensed formula — atoms grouped in a line, bonds left implied. - Skeletal formula — only the carbon skeleton (and functional groups); the carbon–hydrogen atoms are implied.

Being able to convert between these is the core skill of this micro.

Each corner and each line-end is a carbon; the H atoms on carbon are not drawn. The –OH group is shown because it is not on a carbon-to-carbon bond.

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Skeletal shorthand — two rules: - Every corner and every line-end is a carbon atom. - Each carbon has enough hydrogen atoms (drawn or not) to make four bonds in total — so the H atoms on carbon are never drawn.

Functional groups (like –OH, –COOH) are drawn, because they are not part of the carbon backbone.

The most detailed formula is the structural one (every bond shown); the most compact is the skeletal one. The empirical formula is found by dividing the atom counts of the molecular formula by their highest common factor.

RepresentationWhat it showsEthanoic acid as an example
Empiricalsimplest whole-number ratio of atomsCH2O
Molecularthe actual number of each atomC2H4O2
Structural (full)every atom and every bond drawn outH–C(H)(H)–C(=O)–O–H
Condensedgroups written in a line, bonds impliedCH3COOH
Skeletalcarbon skeleton as lines; H on C implied; groups showna line with –COOH on the end carbon
Empirical from molecular: For glucose, C6H12O6, divide every subscript by 6:

C6H12O6 → CH_{2}O.

So glucose and ethanoic acid (C2H4O2) share the empirical formula CH2O even though they are very different molecules.

Worked example — read a skeletal formula

The skeletal formula below has four carbons with a C=C between the 2nd and 3rd. Deduce its molecular formula.

Solution

  1. Count the carbons: four corners/ends → C_{4}.
  2. Add the hydrogens: the two end carbons need 3 H each (CH3); the two middle carbons share the C=C, so each carries 1 H. Total H = 3 + 1 + 1 + 3 = 8.
  3. Combine: C4H8 — this is but-2-ene.

Final answer

C4H8 (but-2-ene).

The double line is the C=C double bond between the 2nd and 3rd carbons. No functional group is attached, so only the backbone is drawn.

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Same formula, different structure: Structural isomers are molecules with the same molecular formula but a different arrangement of atoms — a different structural formula.

Because the atoms are connected differently, isomers can have different properties (and may even be in different classes of compound).

C4H10 has two structural isomers — a straight chain and a branched chain:

A straight chain of four carbons.

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The same C₄H₁₀ atoms, but the fourth carbon branches off the middle — a different structural isomer.

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Three ways isomers differ: Two molecules can share a molecular formula but differ in:

- chain branching — butane vs 2-methylpropane (C4H10); - position of a group — propan-1-ol vs propan-2-ol (C3H8O); - functional group / class — ethanol (an alcohol) vs methoxymethane (an ether), both C2H6O.
How this is tested: Two question shapes appear again and again:

- Paper 1A (MCQ): 'which is a correct alternative representation of this molecule?' or 'which structure is a structural isomer of …?' - Paper 2: 'draw a structural isomer of molecule X' or 'state the type of formula shown'.

For a 'draw an isomer' mark you must keep the same molecular formula but show a genuinely different connectivity.
Don't lose the easy mark: A drawing that is just the same molecule flipped or rotated earns nothing — it must be a different structure. Count the atoms in your answer to check the molecular formula still matches.

IB-style question — name the representation (a)

(a) The compound propan-1-ol can be written as CH3CH2CH2OH. State the type of formula this is. [1]

How to score the marks

  1. The atoms are written grouped in a line (CH3, CH2, …) with the bonds not drawn out individually.
  2. That is the definition of a condensed structural formula (it is not skeletal — the carbons and hydrogens are written, not implied).

Final answer

A condensed (structural) formula.

IB-style question — draw an isomer (b)

(b) Molecule X is butan-1-ol, C4H10O. Draw the structural formula of one structural isomer of X that is also an alcohol. [1]

How to score the marks

  1. Keep the molecular formula: any answer must still be C4H10O.
  2. Change the connectivity: move the –OH group, or branch the chain. For example, butan-2-ol (CH3CH(OH)CH2CH3) puts the –OH on the second carbon.
  3. Check the class: it still has an –OH group, so it is still an alcohol, as required.

Final answer

Butan-2-ol, CH3CH(OH)CH2CH3 (–OH on carbon 2). 2-methylpropan-1-ol or 2-methylpropan-2-ol would also score.

Try an IB Exam Question — Free AI Feedback

Test yourself on Representing organic molecules. Write your answer and get instant AI feedback — just like a real IB examiner.

Glucose has the molecular formula C6H12O6.

its empirical formula.
[1 mark]

Related Chemistry Topics

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3.1.1The periodic table: periods, groups and blocks
3.1.2Periodic trends in atomic properties
3.1.3Chemical trends of groups and period 3
3.2.1Organic compounds and homologous series
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