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NotesBiology HLTopic 3.3Synthesis of carbohydrates, amino acids and other carbon compounds using the products of the Calvin cycle and mineral nutrients
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3.3.189 min read

Synthesis of carbohydrates, amino acids and other carbon compounds using the products of the Calvin cycle and mineral nutrients (Biology HL)

IB Biology · Unit 3

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Contents

  1. 1Building carbon compounds at Higher Level
  2. 2From air to molecule — carbon fixation
  3. 3Glucose — the hub, and the fates of fixed carbon
  4. 4Building everything from triose phosphate
  5. 5Exam-style question
Building carbon compounds at Higher Level: An AHL statement that closes the Calvin cycle: what its product becomes, and why plants need mineral nutrients.

Practise this as you read

  • Outline how triose phosphate is used.
  • Explain why plants need nitrogen and phosphorus.

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The big idea: Every carbon atom in a plant — in its sugars, its starch, its cell walls and its oils — started out as carbon dioxide (CO₂) in the air.

From air to molecule

1

Fix the carbon

In photosynthesis, a plant takes that CO₂ and locks its carbon into a biological molecule. This is called carbon fixation.

2

Make glucose first

The first carbohydrate made is triose phosphate; plants join it to make glucose.

3

Build everything else

From glucose, the plant can build everything else it needs — including energy-rich oils.

CO₂ → carbon fixation → glucose → everything else

Photosynthesis fixes carbon dioxide from the air; the Calvin cycle makes triose phosphate, from which glucose and the plant's other carbon compounds are built.

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Carbon fixation
The process of taking carbon dioxide (CO₂) from the air and building its carbon into an organic (biological) molecule. In plants this happens during photosynthesis.
Glucose
The first carbohydrate a plant makes from fixed carbon. It is the starting molecule from which other biological molecules are built.
Organic molecule
A molecule built around a skeleton of carbon atoms — for example a carbohydrate, a lipid or a protein.
Lipid (oil / fat)
An energy-storage molecule made from glycerol and fatty acids. Plant oils are lipids, often stored in seeds.
Why this matters: Carbon fixation is how carbon enters the living world.

Without it, the carbon in the air would never become part of a plant, an animal or you.

So the same CO₂ that a plant absorbs can end up as the oil in a sunflower seed — built, step by step, from atmospheric carbon.

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A plant does not make glucose just to store it as glucose. Glucose is a hub molecule: once it has been made, the plant converts it into whatever else it needs.

Think of a workbench: Think of glucose as the raw material on a workbench. The same starting material can be turned into several very different finished products.
Glucose is the starting point: The carbon fixed from CO₂ is first built into triose phosphate, and from it glucose.

These are then used to build all the other biological molecules of the plant:

starch (storage), cellulose (cell walls), amino acids and proteins (with added nitrogen), and lipids / oils (energy-dense storage).

Every one of these is made from carbon that began as atmospheric CO₂.

Glucose is the starting point: once made, the plant converts it into starch, cellulose, amino acids and lipids (oils). Every one of these molecules is built from carbon that began as CO₂.

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The fates of the fixed carbon: The glucose a plant makes can take several different fates. It can be:

respired (broken down to release energy), stored as starch, built into cellulose for cell walls, combined with nitrogen to make amino acids and proteins, or converted into lipids (oils) for energy-dense storage.
What the glucose is used forMolecule madeWhy the plant makes it
Broken down for energy(used in respiration)Releases energy to power the plant's cells
Joined into a storage carbohydrateStarchStores energy compactly and insolubly inside the plant
Joined into a structural carbohydrateCelluloseBuilds strong cell walls
Combined with nitrogenAmino acids → proteinsNeeds nitrogen (N) taken up from the soil as well as carbon
Converted to glycerol and fatty acids, then joinedLipids (oils / fats)Stores the most energy per gram — packed into seeds
Building oils — the pathway: To make an oil, the plant uses glucose in a short chain of steps:

glucose → glycerol and fatty acids → these join together (by condensation) → a lipid (oil).

The oil is then stored, very often in seeds, where its packed energy fuels the growth of the next plant.
StepWhat happensWhere the carbon comes from
1Carbon dioxide is absorbed from the air and fixed in photosynthesisAtmospheric CO₂
2The fixed carbon is used to make glucoseThe CO₂ just fixed
3Glucose is converted into glycerol and fatty acidsThe glucose made in step 2
4Glycerol and fatty acids join (by condensation) to form lipidsGlycerol + fatty acids from step 3
5The lipids (oils) are stored, often in seedsThe lipids made in step 4

Stored as starch (carbohydrate)

  • Made by joining glucose molecules together
  • A carbohydrate — contains C, H and O
  • A short-term, compact energy store
  • Common in stems, roots and tubers (e.g. potato)

Stored as oil (lipid)

  • Made from glycerol and fatty acids
  • A lipid — also built from C, H and O
  • Stores the most energy per gram of any food molecule
  • Common in seeds (e.g. sunflower, olive)
Remember it as: Air → triose phosphate → glucose → everything. Carbon enters as CO₂, becomes triose phosphate and then glucose, and glucose is the hub from which starch, cellulose, protein and oils are all built.

Oils need an extra conversion: glucose → glycerol + fatty acids → lipid.
The big idea: The Calvin cycle's product is triose phosphate. With only C, H and O it can become carbohydrates and lipids; with mineral nutrients from the soil, nitrogen and phosphorus (and sulfur), it becomes amino acids and nucleotides too.
Triose phosphate from the Calvin cycle with four branches drawn one at a time: glucose, sucrose, starch and cellulose; with nitrate, amino acids and proteins; with phosphate, nucleotides for DNA, RNA and ATP; glycerol and fatty acids joined into lipids
From triose phosphate to everything, step by step.

The points to remember

  • Triose phosphate → glucose → sucrose (transport), starch (store), cellulose (walls).
  • + nitrate (N) → amino acids → proteins; some amino acids also need sulfur.
  • + phosphate (P) → nucleotides → DNA, RNA and ATP.
  • Triose phosphate → glycerol + fatty acids → lipids.
  • Minerals are absorbed by the roots from the soil.
Remember it as: Sugar is the skeleton; minerals add the N and P.

Real example: nitrogen deficiency. Crops short of nitrate cannot make enough amino acids for proteins such as Rubisco: their older leaves turn yellow and growth slows, which is why farmers add nitrate fertiliser.

Trap: Photosynthesis alone gives only C, H and O: amino acids and nucleotides also need minerals from the soil.

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How this is tested: A common question here is a 4-mark Outline: explain how a plant builds oils using carbon taken from the atmosphere.

The chain examiners want

1

Start in the air

The carbon begins as CO₂ in the atmosphere.

2

Fix the carbon

The carbon is fixed in photosynthesis.

3

Make glucose

The fixed carbon is built into glucose.

4

Convert it

Glucose is converted to glycerol and fatty acids.

5

Join them

Glycerol and fatty acids are joined into a lipid.

Examiners want a clear chain of steps — each step is a separate scoring point.

Trap: Do not jump straight from 'CO₂' to 'oil': name every intermediate.

Exam-style question — outline how plants build oils from atmospheric carbon

Outline how a plant uses carbon taken from the atmosphere to build oils. [4]

Step by step

  1. Fix the carbon. Carbon dioxide (CO₂) is absorbed from the air and fixed during photosynthesis.
  2. Make sugar. The fixed carbon is first made into triose phosphate, then glucose.
  3. Convert the glucose. Glucose is converted into glycerol and fatty acids — the building blocks of a lipid.
  4. Join into a lipid. The glycerol and fatty acids are joined together (by condensation) to form a lipid (oil), which is then stored, often in seeds.

Final answer

CO₂ from the air is fixed in photosynthesis; the fixed carbon makes glucose; glucose is converted to glycerol and fatty acids; these join to form a lipid (oil), stored in seeds.

Why this works: Each sentence is a separate step in the pathway: fix carbon, make sugar, make glycerol and fatty acids, join them into a lipid.

An 'Outline' of four steps needs four linked steps, not 'CO₂ becomes oil' written four ways.
StepWhat happensWhere the carbon comes from
1Carbon dioxide is absorbed from the air and fixed in photosynthesisAtmospheric CO₂
2The fixed carbon is used to make glucoseThe CO₂ just fixed
3Glucose is converted into glycerol and fatty acidsThe glucose made in step 2
4Glycerol and fatty acids join (by condensation) to form lipidsGlycerol + fatty acids from step 3
5The lipids (oils) are stored, often in seedsThe lipids made in step 4

Another question in the papers' style:

IB-style questionOutline[3 marks]

Outline how a plant uses the products of the Calvin cycle and mineral nutrients to make proteins and nucleic acids.

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between the way a plant builds a carbohydrate such as starch and the way it builds a lipid such as oil, starting in each case from sugars made in the Calvin cycle. [2 marks]

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