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NotesBiology HLTopic 3.1Interactions between substrate and active site to allow induced-fit binding
Back to Biology HL Topics
3.1.57 min read

Interactions between substrate and active site to allow induced-fit binding (Biology HL)

IB Biology · Unit 3

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Contents

  1. 1Induced fit at Higher Level
  2. 2Specificity and induced fit
  3. 3Both change shape
  4. 4Exam-style question
Induced fit at Higher Level: The same statement as SL. HL questions ask how substrate and enzyme interact; at HL the idea of a shape change also explains allosteric inhibition, later in this topic.

Practise this as you read

  • Identify induced-fit binding from a diagram.
  • Outline how substrate and active site interact.

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Each enzyme works on only one substrate (or one type of reaction). This is called specificity.

Where specificity comes from: Specificity comes from shape: the active site is complementary to the substrate, so only that substrate fits, like one particular key fitting one particular lock.
Why enzymes are specific: The active site has a particular 3-D shape.

Only a substrate whose shape is complementary to the active site can bind to it.

A substrate of the wrong shape simply does not fit, so the enzyme cannot act on it. That is why each enzyme catalyses only one reaction — its specificity.

The active site is complementary in shape to one substrate, so only that substrate fits — this is the source of an enzyme's specificity.

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Induced fit — the modern model: The active site is not a rigid, perfectly pre-shaped hole. As the substrate binds, the active site changes shape slightly to mould more closely around it. This is called induced fit (the substrate 'induces' a better fit).

What induced fit explains

  • The snug moulding puts a strain on the substrate's bonds, which helps the reaction happen more easily.
  • So induced fit explains both specificity and how enzymes speed reactions up.

Lock-and-key (older idea)

  • Active site is a rigid, exact match
  • Substrate slots in unchanged
  • A simple picture of specificity
  • Now superseded by induced fit

Induced fit (modern model)

  • Active site is slightly flexible
  • Active site moulds around the substrate
  • Strains the substrate's bonds → reaction easier
  • The accepted model — name this one
FeatureLock-and-key (older model)Induced fit (modern model)
Shape of the active site before bindingAlready a perfect, rigid match for the substrateA close but not exact match — slightly flexible
What happens as the substrate bindsThe substrate simply slots in; nothing movesThe active site changes shape slightly to mould around the substrate
Why specificity still holdsOnly a substrate of the right shape fits the rigid siteOnly a substrate of a roughly complementary shape can induce the right fit
Which model to useA useful simple picture, but now supersededThe accepted model — name THIS one if asked
An easy way to remember: Lock-and-key = a stiff lock that never moves. Induced fit = a glove that adjusts around the hand once it goes in.

If an exam asks which model the diagram shows and the active site changes shape on binding, the answer is induced fit.
What every enzyme has in common: However different they look, all enzymes share the same core features: they are globular proteins, they are biological catalysts, each has an active site, each is specific, and each is left unchanged so it can be reused.

A 'feature shared by all enzymes' question is asking for one of these.
Feature shared by every enzymeWhat it means
They are globular proteinsFolded into a rounded 3-D shape, with a specific surface pocket
They are biological catalystsThey speed up a reaction without being used up
They have an active siteA specific region whose shape is complementary to one substrate
They are specificEach enzyme catalyses only one reaction / one substrate
They are unchanged and reusableThe enzyme is released intact and can catalyse the same reaction again

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The big idea: In induced fit, binding changes both partners: the active site changes shape to mould round the substrate, and the substrate changes shape too.
Four panels drawn step by step: an enzyme whose active site is not an exact match for a round substrate; the site closing round the bound substrate; the substrate squashed out of shape with a strained bond; the products leaving and the site back to its first shape
Induced fit, one step at a time.

The points to remember

  • Before binding, the active site is close to, but not an exact match for, the substrate.
  • As the substrate binds, the active site changes shape and closes round it.
  • The substrate changes shape too: its bonds are strained, so they break more easily.
  • After the products leave, the active site goes back to its original shape.
Remember it as: Induced fit: both partners change shape.

Real example: carboxypeptidase A. When a substrate binds to carboxypeptidase A, a protein-digesting enzyme, one amino acid of the active site swings across by about a nanometre to close over it. The bound substrate is pulled slightly out of shape too.

Trap: Induced fit is not permanent. The substrate does not permanently alter the active site; the enzyme is unchanged once the products leave.
How this is tested: Questions test the model of binding, the features all enzymes share, and why enzymes are specific.
TypeFormatWhat to do
Multiple choiceA diagram of an enzyme and substrate: identify the model of binding.If the active site changes shape as the substrate binds, the answer is induced fit, not lock-and-key.
Multiple choicePick a feature shared by all enzymes.Choose a true general statement (globular protein, has an active site, specific, a catalyst, unchanged/reusable).
WrittenAn Explain question asks why enzymes are specific.Link the complementary shape of the active site and substrate to induced fit.

Exam-style question — explain why enzymes are specific

Enzymes are described as specific. Explain how the structure of an enzyme makes it specific to its substrate. [4]

Step by step

  1. Name the active site. Each enzyme has a region called the active site, where the substrate binds.
  2. Link shape to binding. The active site has a specific 3-D shape that is complementary to the shape of one particular substrate.
  3. Explain the consequence. Only a substrate of the correct, complementary shape can fit and bind, forming an enzyme-substrate complex; a substrate of the wrong shape cannot bind.
  4. Add induced fit. As the substrate binds, the active site changes shape slightly to mould around it (induced fit), so only the right substrate produces the proper fit.

Final answer

Each enzyme has an active site of a specific shape that is complementary to one substrate; only that substrate fits and binds (forming an enzyme-substrate complex), and induced fit moulds the site around it — so the enzyme acts on only one substrate.

Why this works: Each sentence adds one idea — active site, complementary shape, only the right substrate fits, induced fit.

An 'Explain [4]' needs the cause-and-effect chain spelled out, not just the word 'specific' repeated.

An enzyme at work: the substrate binds the active site, forming an enzyme-substrate complex (induced fit); the reaction occurs and the products are released, leaving the enzyme unchanged and able to be reused.

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Reading a data question: Enzyme topics are a data-question favourite. A table might show one enzyme tested against several different substrates, with a product formed for only one of them.

The reasoning to write is always the same: the enzyme catalyses only the substrate whose shape is complementary to its active site, so the others give no product.

Another question in the papers' style:

IB-style questionOutline[3 marks]

Outline how the substrate and the active site interact in induced-fit binding.

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IB Exam Questions on Interactions between substrate and active site to allow induced-fit binding

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  • Define

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    Present arguments FOR and AGAINST with a balanced conclusion.

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Related Biology HL Topics

Continue learning with these related topics from the same unit:

3.1.1Enzymes as catalysts3.1.2Role of enzymes in metabolism3.1.3Anabolic and catabolic reactions3.1.4Enzymes as globular proteins with an active site for catalysis
View all Biology HL topics
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Previous3.1.4Enzymes as globular proteins with an active site for catalysisNextRole of molecular motion and substrate-active site collisions in enzyme catalysis3.1.6

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