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NotesBiologyTopic 1.1Hydrogen bonds from the polar covalent bonds in water
Back to Biology Topics
1.1.211 min read

Hydrogen bonds from the polar covalent bonds in water

IB Biology · Unit 1

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Contents

  1. 1Sharing electrons unequally
  2. 2Slight charges: δ+ and δ−
  3. 3Water molecules attract each other: the hydrogen bond
  4. 4Weak alone, strong together
  5. 5Drawing two or more water molecules
  6. 6Exam-style question (step by step)
The big idea: A water molecule is one oxygen atom and two hydrogen atoms, held together by sharing electrons. Oxygen does not share fairly: it pulls the electrons closer to itself.

Picture a tug of war between an adult and a small child, both holding one rope. The rope ends up closer to the adult.

In water, oxygen is the adult and hydrogen is the child. The rope is the pair of shared electrons.

Two pictures. Fair sharing: two hydrogen atoms with the pair of shared electrons exactly in the middle of the bond. Unfair sharing in water: a big oxygen atom and a small hydrogen atom, with the shared electrons pulled close to the oxygenTwo pictures. Fair sharing: two hydrogen atoms with the pair of shared electrons exactly in the middle of the bond. Unfair sharing in water: a big oxygen atom and a small hydrogen atom, with the shared electrons pulled close to the oxygen
Two atoms pulling equally keep the electrons in the middle. In water, oxygen pulls them towards itself.
Remember it as: Oxygen wins the tug of war, so the shared electrons sit closer to it.

The points to remember

  • The atoms in water are held together by sharing electrons. A shared pair is a covalent bond.
  • Oxygen pulls on the shared electrons harder than hydrogen does: it is more electronegative.
  • So the electrons sit closer to the oxygen. Sharing that is not equal makes a polar covalent bond.
Real example: methane: Methane (CH₄), the gas in a kitchen hob, shares its electrons almost fairly, so its bonds are not polar. Water's bonds are strongly polar.

One mix-up to avoid:

The electrons are still shared: Oxygen does not take an electron away from hydrogen. The pair is still shared, just unequally.

(Taking an electron away would make an ionic bond, and water has none.)

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The big idea: Because the shared electrons sit closer to the oxygen, the oxygen end is slightly negative and each hydrogen is slightly positive. These small charges are written with the Greek letter delta: a partial charge.

The points to remember

  • The oxygen end is slightly negative (δ−); each hydrogen is slightly positive (δ+).
  • δ means partial: a small charge, not the full charge of an ion. Water is neutral overall.
  • The molecule is bent (about 104.5°), so both δ+ hydrogens sit on one side and the δ− oxygen on the other.
  • A molecule with a δ− end and a δ+ end is a polar molecule.
Remember it as: δ means 'a bit': a bit negative on the O, a bit positive on each H.
One water molecule: an oxygen atom joined to two hydrogen atoms by single lines at an angle of 104.5 degrees, with δ− beside the oxygen and δ+ beside each hydrogenOne water molecule: an oxygen atom joined to two hydrogen atoms by single lines at an angle of 104.5 degrees, with δ− beside the oxygen and δ+ beside each hydrogen
The drawing to aim for: one O, two H, single bonds at an angle, δ− on the O, δ+ on each H.

Real example: hold a plastic comb you have just run through dry hair next to a thin stream of water from a tap. The stream bends towards the comb: the charged comb pulls on the δ+ and δ− ends of the water molecules.

The trap: full charges: Never write a bare + or − on water. A full charge means an ion, and no electron has moved from one atom to another.

Always write δ+ and δ−.

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The big idea: Because each water molecule is polar, its molecules attract one another. The δ+ hydrogen of one molecule is pulled towards the δ− oxygen of a neighbour. This weak attraction is a hydrogen bond.

The points to remember

  • The δ+ hydrogen of one water molecule is attracted to the δ− oxygen of a neighbour: a hydrogen bond.
  • Hydrogen bonds act between molecules; covalent bonds act within one molecule.
  • A hydrogen bond is weak compared with a covalent bond, and it is drawn as a dashed line.
  • Each water molecule can hydrogen-bond to several neighbours at once.
Remember it as: Covalent WITHIN a molecule, hydrogen bond BETWEEN molecules.
Dew drops as rounded beads on a leaf, one drop magnified to show water molecules held together by dashed hydrogen bondsDew drops as rounded beads on a leaf, one drop magnified to show water molecules held together by dashed hydrogen bonds
Dew on a leaf stays as rounded beads because every molecule in a drop is held to its neighbours by hydrogen bonds.

Real example: dew forms on grass and leaves on clear nights. Each drop stays a rounded bead rather than spreading into a film, because hydrogen bonds pull every molecule towards its neighbours.

Two bent water molecules with δ− on each oxygen and δ+ on each hydrogen; a dashed line labelled hydrogen bond runs from a δ+ hydrogen of the left molecule to the δ− oxygen of the right oneTwo bent water molecules with δ− on each oxygen and δ+ on each hydrogen; a dashed line labelled hydrogen bond runs from a δ+ hydrogen of the left molecule to the δ− oxygen of the right one
A hydrogen bond (dashed) runs from a δ+ H of one molecule to the δ− O of the other. The solid O–H lines stay inside each molecule.
Covalent bondHydrogen bond
Where it actswithin one molecule (O–H)between separate molecules
What causes itsharing a pair of electronsδ+ H attracted to δ− O
Strengthstrongweak, but there are very many
How it is drawna solid linea dashed line

Methane (CH₄) and water (H₂O) are molecules of almost the same mass. At 20 °C methane is a gas and water is a liquid. The difference is what holds the molecules together.

The points to remember

  • One hydrogen bond is easy to break; a drop of water holds a huge number of them.
  • So a lot of energy is needed to pull water molecules apart.
  • That is why water is a liquid at room temperature while a similar-sized non-polar molecule is a gas.
  • The same bonds give water the properties the next pages use: it sticks to itself and it warms up slowly.
Remember it as: One thread snaps easily; a rope of threads holds.
Table comparing water and methane: molecular mass 18 and 16, boiling point 100 and −161 °C, freezing point 0 and −182 °C, liquid and gas at 20 °CTable comparing water and methane: molecular mass 18 and 16, boiling point 100 and −161 °C, freezing point 0 and −182 °C, liquid and gas at 20 °C
Almost the same mass, a very different boiling point. The difference is the hydrogen bonds.
Real example: methane: Methane molecules are non-polar, so they cannot form hydrogen bonds and drift apart as a gas even at −161 °C. Water molecules are held together by hydrogen bonds, so water stays liquid all the way up to 100 °C.

Why so many bonds matter. Any one hydrogen bond is easy to break. But there are so many of them that separating water molecules takes a lot of energy, and that is the reason behind nearly all of water's special properties.

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The big idea: The exam asks you to draw two or more water molecules and the hydrogen bonds between them, with δ+ and δ− to show the polarity. Here is the drawing, one step at a time.

The points to remember

  • Draw each molecule bent: one O, two H, single lines for the covalent bonds.
  • Write δ− on every O and δ+ on every H.
  • Draw a dashed line from a δ+ H of one molecule to the δ− O of another, and label it hydrogen bond.
  • Never join O to O or H to H, and never draw the hydrogen bond as a solid line.
Remember it as: Bent molecule, δ on every atom, dashed line H to O, label it.
Two water molecules drawn step by step, then the partial charges, then a dashed hydrogen bond from a δ+ hydrogen to the δ− oxygen, labelled
Two molecules, then the charges, then the dashed hydrogen bond: the full-mark drawing one step at a time.
The trap: the wrong ends: A hydrogen bond joins a hydrogen of one molecule to the oxygen of another. A dashed line from O to O, or a solid line between the molecules, does not count.

Real example: in a glass of water each molecule is hydrogen-bonded to three or four neighbours at any moment, and the bonds break and re-form about a trillion times a second. Your drawing shows one frozen instant.

How this is tested: A multiple-choice question shows a water molecule and asks which symbol belongs on the oxygen, or what kind of bonding holds the atoms together.

A written part asks you to draw one water molecule for two marks, or two molecules interacting for four.
IB-style questionDraw[4 marks]

Dew forms as rounded drops on a leaf. Draw a labelled diagram to show how two water molecules interact with each other.

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Two water molecules drawn step by step, then the partial charges, then a dashed hydrogen bond from a δ+ hydrogen to the δ− oxygen, labelled
Two molecules, then the charges, then the dashed hydrogen bond: the full-mark drawing one step at a time.
IB-style questionDraw[2 marks]

Sea water is about 96 % water. Draw a diagram to show the structure of one water molecule.

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A water molecule drawn step by step: the oxygen, each hydrogen with its bond at an angle, then δ− and δ+
Draw one water molecule, one atom or label at a time.
The trap: a straight line: H–O–H drawn in a straight line loses the shape mark: the bonds must sit at an angle.

A circle labelled H₂O is not a structure either. Show each atom and each bond.

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the type of bond that joins the oxygen atom to each hydrogen atom within a water molecule. [1 mark]

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